Budejovice Yth.: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2021-07-01 | Jan Zíka | Budejovice Yth. | Budejovice U17 | — |
| 2020-09-04 | Jan Zíka | Sedlec Yth. | Budejovice Yth. | — |
| 2016-07-01 | Matej Rynes | Budejovice Yth. | Budejovice U17 | — |
| 2016-07-01 | Daniel Kerl | Budejovice Yth. | Budejovice U17 | — |
| 2016-03-15 | Nicolas Penner | Budejovice Yth. | Sparta Yth. | — |
| 2015-03-13 | Daniel Kerl | Budejovice Yth. | Roudne Yth. | Loan |
| 2014-08-01 | Vaclav Drchal | Budejovice Yth. | Sparta U17 | — |
| 2012-11-15 | Jan Zíka | Budejovice Yth. | Sedlec Yth. | — |
| 2012-02-10 | Matej Rynes | Horni Plana Yth | Budejovice Yth. | — |
| 2010-08-27 | Nicolas Penner | Budejovice Yth. | 4 Dvory Yth. | Loan |
| 2010-08-27 | Daniel Kerl | Budejovice Yth. | 4 Dvory Yth. | Loan |