C. Budejovice B: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2025-07-01 | Jan Zíka | C. Budejovice B | Mlada Boleslav | Free |
| 2025-01-01 | Jan Zíka | Budejovice U19 | C. Budejovice B | — |
| 2023-07-01 | Daniel Kerl | C. Budejovice B | SILON Taborsko | — |
| 2023-01-08 | Daniel Kerl | C. Budejovice B | SILON Taborsko | Loan |
| 2022-07-28 | Daniel Kerl | C. Budejovice B | Trinec | Loan |
| 2020-01-01 | Daniel Kerl | Budejovice U19 | C. Budejovice B | — |
| 2018-09-11 | Sergiy Kosovskyi | C. Budejovice B | Obolon-Brovar | Free |
| 2018-08-03 | Sergiy Kosovskyi | Vorskla II | C. Budejovice B | Free |
| 2017-07-01 | Jindrich Stanek | C. Budejovice B | C. Budejovice | — |
| 2017-02-21 | Jindrich Stanek | C. Budejovice B | HFK Trebic | Loan |
| 2016-09-05 | Jindrich Stanek | Everton U23 | C. Budejovice B | Free |