Schaffh. Yth.: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2021-07-19 | Noah Brogli | Schaffh. Yth. | Winterthur Yth. | Free |
| 2019-07-10 | Amir Saipi | Schaffh. Yth. | FC Schaffhausen | — |
| 2019-07-01 | Carmine Chiappetta | Schaffh. Yth. | FC Basel U17 | Free |
| 2018-07-01 | Amir Saipi | Schaffh. Yth. | GC Zürich U21 | Loan |
| 2017-08-02 | Amir Saipi | Schaffh. Yth. | Winterthur U21 | Loan |
| 2016-07-01 | Rouven Tarnutzer | Schaffh. Yth. | Radolfzell Yth. | Free |
| 2015-07-01 | Rouven Tarnutzer | FC Thayngen Jgd | Schaffh. Yth. | Free |