Querétaro U20: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2023-07-01 | Pablo Ortiz | Querétaro U20 | Querétaro U23 | — |
| 2023-07-01 | Christopher Figueroa | Querétaro U20 | Querétaro U23 | — |
| 2023-07-01 | Aldahir Pérez | Querétaro U20 | Querétaro U23 | — |
| 2022-07-01 | Rodrigo López | Querétaro U20 | Querétaro FC | — |
| 2022-01-01 | Aldahir Pérez | Querétaro U18 | Querétaro U20 | — |
| 2021-07-01 | Luis Villegas | Querétaro U20 | Tijuana U20 | Free |
| 2021-07-01 | Christopher Figueroa | Querétaro U18 | Querétaro U20 | — |
| 2020-07-01 | Rafael Fernández | Querétaro U20 | Dorados Sinaloa | — |
| 2020-07-01 | Pablo Ortiz | Querétaro U17 | Querétaro U20 | — |
| 2019-07-01 | Rodrigo López | Querétaro U17 | Querétaro U20 | — |
| 2019-07-01 | Luis Villegas | Querétaro U17 | Querétaro U20 | — |
| 2019-07-01 | Benny Díaz | Querétaro U20 | Querétaro FC | — |
| 2018-07-01 | Rafael Fernández | Atlas U17 | Querétaro U20 | — |
| 2018-01-01 | Benny Díaz | Querétaro U20 | Cimarrones II | Loan |
| 2016-07-01 | Luis Romo | Querétaro U20 | Querétaro II | — |
| 2016-07-01 | Brian García | Querétaro U20 | Belén U20 | Free |
| 2016-07-01 | Benny Díaz | Querétaro U17 | Querétaro U20 | — |
| 2015-07-01 | Jordi Cortizo | Querétaro II | Querétaro U20 | Loan |
| 2015-07-01 | Brian García | Querétaro U17 | Querétaro U20 | — |
| 2014-07-01 | Orbelín Pineda | Querétaro U20 | Querétaro FC | — |