Cowdenbeath: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2026-07-01 | Rhys Walker | Falkirk | Cowdenbeath | Free |
| 2026-01-30 | Jack McConnell | Motherwell U18 | Cowdenbeath | Loan |
| 2025-11-07 | Mark Ferrie | Without Club | Cowdenbeath | — |
| 2025-09-12 | Rhys Walker | Falkirk | Cowdenbeath | Loan |
| 2025-08-18 | Bryan Mwangi | Dundee United | Cowdenbeath | Free |
| 2024-08-07 | Rhys Walker | Falkirk FC Reserves | Cowdenbeath | Loan |
| 2024-07-17 | Olly Whyte | Motherwell B | Cowdenbeath | Loan |
| 2023-08-25 | Robbie Garcia | Motherwell B | Cowdenbeath | Loan |
| 2023-07-01 | Craig Hepburn | St. Johnst. B | Cowdenbeath | Loan |
| 2022-07-01 | Aiden Gilmartin | St. Mirren U18 | Cowdenbeath | Loan |
| 2022-02-02 | Alex Ferguson | St. Johnst. B | Cowdenbeath | Loan |
| 2020-12-26 | Nicky Hogarth | Rangers B | Cowdenbeath | Loan |
| 2020-12-11 | Ross Munro | Ross County | Cowdenbeath | Loan |
| 2020-09-25 | Ross Sinclair | St. Johnstone | Cowdenbeath | Loan |
| 2019-08-16 | Connor Smith | Hearts FC B | Cowdenbeath | Loan |
| 2018-08-24 | Robbie Deas | Celtic B | Cowdenbeath | Loan |
| 2017-07-01 | Jamie Sneddon | Cowdenbeath | Partick Thistle | Free |
| 2017-01-12 | Liam Henderson | Falkirk | Cowdenbeath | Loan |
| 2015-01-02 | Jamie Sneddon | Cowdenbeath U20 | Cowdenbeath | — |
| 2014-09-11 | Marcus Fraser | Celtic | Cowdenbeath | Loan |