Independiente B: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2022-07-01 | Patrik Mercado | Independiente B | Independiente | — |
| 2022-01-01 | Patrickson Delgado | Independiente B | Independiente | — |
| 2022-01-01 | Joel Ordóñez | Independiente B | Independiente | — |
| 2022-01-01 | Anthony Valencia | Independiente B | Independiente | — |
| 2021-07-01 | Patrik Mercado | Independiente B | Ind. Jrs. | Loan |
| 2021-07-01 | Alan Minda | Independiente B | Independiente | — |
| 2021-01-01 | Yaimar Medina | IDV U20 | Independiente B | Loan |
| 2021-01-01 | José Andrés Hurtado | Independiente B | Independiente | — |
| 2021-01-01 | Joel Ordóñez | IDV U20 | Independiente B | — |
| 2021-01-01 | Jhoanner Chávez | Independiente B | Independiente | — |
| 2020-08-01 | Anthony Valencia | Independiente B | Ind. Jrs. | Loan |
| 2020-03-07 | José Andrés Hurtado | Independiente B | Ind. Jrs. | Loan |
| 2020-03-07 | Jhoanner Chávez | Independiente B | Ind. Jrs. | Loan |
| 2020-03-01 | Patrickson Delgado | Independiente B | Ind. Jrs. | Loan |
| 2020-03-01 | Alan Minda | Independiente B | Ind. Jrs. | Loan |
| 2020-01-01 | Willian Pacho | Independiente B | Independiente | — |
| 2020-01-01 | Piero Hincapié | Independiente B | Independiente | — |
| 2020-01-01 | Patrik Mercado | IDV U20 | Independiente B | — |
| 2020-01-01 | Patrickson Delgado | IDV U20 | Independiente B | — |
| 2020-01-01 | Moisés Caicedo | Independiente B | Independiente | — |