SJE Academy: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2025-01-17 | Kaedren Spivey | SJE Academy | SJ Earthquakes | — |
| 2024-05-09 | Rohan Rajagopal | SJE Academy | The Town FC | — |
| 2023-05-16 | Oscar Verhoeven | SJE Academy | SJ Earthquakes | — |
| 2023-05-16 | Edwyn Mendoza | SJE Academy | San Jose II | — |
| 2023-01-26 | Ethan Kohler | SJE Academy | Oakland Roots | Free |
| 2022-09-02 | Fidel Barajas | SJE Academy | Charleston | Free |
| 2022-07-01 | Owen Anderson | SJE Academy | RSL Academy | Free |
| 2022-01-14 | Niko Tsakiris | SJE Academy | SJ Earthquakes | — |
| 2021-07-01 | Fidel Barajas | SAC Academy | SJE Academy | Free |
| 2019-11-11 | Emmanuel Ochoa | SJE Academy | SJ Earthquakes | — |
| 2019-07-01 | Emmanuel Ochoa | SCB Academy | SJE Academy | Free |
| 2019-01-23 | Cade Cowell | SJE Academy | SJ Earthquakes | — |
| 2018-09-01 | Diego Luna | SJE Academy | Barca Academy | Free |
| 2018-07-01 | Cade Cowell | BU SC Yth. | SJE Academy | Free |
| 2016-08-01 | Drake Callender | SJE Academy | UC Berkeley | Free |
| 2015-08-01 | JT Marcinkowski | SJE Academy | Georgetown | — |