Borneo FC: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2025-07-20 | Mohammad Al-Husseini | Al-Quwa Al-Jaw. | Borneo FC | Free |
| 2025-07-01 | Stefano Lilipaly | Borneo FC | Dewa United | Loan |
| 2025-02-07 | Léo Gaúcho | Borneo FC | Genclerbirligi | Free |
| 2024-08-03 | Win Naing Tun | Borneo FC | Chiangrai Utd. | Free |
| 2024-07-01 | Léo Gaúcho | Valmiera | Borneo FC | Free |
| 2023-07-20 | Julio Cesar | Borneo FC | Veres Rivne | Free |
| 2023-07-01 | Win Naing Tun | Yangon United | Borneo FC | — |
| 2023-07-01 | Nadeo Argawinata | Bali United | Borneo FC | — |
| 2023-01-06 | Julio Cesar | Vitebsk | Borneo FC | Free |
| 2022-05-01 | Stefano Lilipaly | Bali United | Borneo FC | Free |
| 2020-01-01 | Nadeo Argawinata | Borneo FC | Bali United | — |
| 2016-01-01 | Nadeo Argawinata | Football School | Pusamania Borneo | — |