Flora (Meistriliiga): every transfer in and out, fees paid and earned, squad market value and €1.2m earned.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2026-04-16 | Kristen Lapa | Flora | Tammeka | Loan |
| 2026-03-11 | Nikita Mihhailov | Flora | Michalovce | Free |
| 2026-01-29 | Erko Tougjas | Flora | Halmstad | €360k |
| 2026-01-01 | Marco Lukka | Flora | Kuressaare | Free |
| 2026-01-01 | Tristan Pajo | Flora | Vaprus | Free |
| 2025-08-21 | Vladislav Kreida | SK Sigma Olomouc, a.s. | Flora | Free |
| 2025-07-08 | Oliver Nikola Cekredzi | Flora | Haninge | Free |
| 2025-07-04 | Oscar Pihela | Flora | Kuressaare | Loan |
| 2025-02-28 | Mathias Palts | Flora | Nõmme United | Free |
| 2025-02-25 | Silver Rebane | Flora | Nõmme United | Free |
| 2025-02-20 | Nikita Kalmokov | Nõmme United | Flora | Free |
| 2025-01-23 | Tony Varjund | Flora | FC Utrecht | Loan |
| 2025-01-08 | Mattias Männilaan | Flora | Lincoln Red Imps | Free |
| 2025-01-04 | Vladislav Kreida | Flora | SK Sigma Olomouc, a.s. | Free |
| 2025-01-01 | Maksim Kalimullin | FC Tallinn | Flora | Free |
| 2025-01-01 | Konstantin Vassiljev | Flora | Retired | Free |
| 2025-01-01 | Oscar Pihela | Kuressaare | Flora | Free |
| 2025-01-01 | Sander Tovstik | Flora II | Flora | Free |
| 2025-01-01 | Player | Flora | TBC | Free |
| 2025-01-01 | Mark Kukk | Flora II | Flora | Free |