Querétaro Yth.: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2020-07-01 | Miguel Vázquez | Querétaro Yth. | San Luis U17 | — |
| 2020-07-01 | Aldahir Pérez | Querétaro Yth. | Querétaro U17 | — |
| 2020-01-01 | Tahiel Jiménez | Querétaro Yth. | Unknown | — |
| 2019-07-01 | Íker Moreno | Querétaro Yth. | Querétaro U17 | — |
| 2018-07-01 | Teun Wilke | Querétaro Yth. | Heerenveen U17 | Free |
| 2018-07-01 | Juan Robles | Querétaro Yth. | Querétaro U17 | — |
| 2017-01-01 | Marcel Ruiz | Querétaro Yth. | Querétaro U17 | — |
| 2015-01-01 | Emilio Rodríguez | Querétaro Yth. | Unknown | — |