Panathinaikos B: every transfer in and out, fees paid and earned, squad market value, €2m spent.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2024-08-31 | Bilal Mazhar | Panathinaikos B | Estrela Amadora | Free |
| 2024-07-10 | Gustavo Furtado | Panathinaikos B | PAS Lamia | Free |
| 2024-07-01 | Miguel Tavares | Panathinaikos B | Panathinaikos | — |
| 2024-07-01 | Konstantinos Lampsias | Panathinaikos B | Panathinaikos | — |
| 2024-07-01 | Klidman Lilo | Panathinaikos B | Panathinaikos | — |
| 2024-07-01 | Georgios Kyriopoulos | Panathinaikos B | Panathinaikos | — |
| 2024-07-01 | Georgios Katris | Panathinaikos B | Panathinaikos | — |
| 2024-07-01 | Elton Fikaj | Panathinaikos B | Panathinaikos | — |
| 2024-07-01 | Dimitrios Kaloskamis | Panathinaikos B | Atromitos | Free |
| 2024-07-01 | Athanasios Dabizas | Panathinaikos B | Panathinaikos | — |
| 2024-07-01 | Andreas Athanasakopoulos | Panathinaikos B | PAS Lamia | Free |
| 2024-01-31 | Giannis Sourdis | Panathinaikos B | PAS Lamia | Free |
| 2024-01-01 | Georgios Katris | PAO U19 | Panathinaikos B | — |
| 2023-08-13 | Evagoras Antoniou | Panathinaikos B | AD Ceuta | Free |
| 2023-07-25 | Alexandros Tereziou | Panathinaikos B | PAS Lamia | Free |
| 2023-07-01 | Elton Fikaj | PAO U19 | Panathinaikos B | — |
| 2023-07-01 | Dimitrios Kaloskamis | PAO U19 | Panathinaikos B | — |
| 2023-02-17 | Klidman Lilo | PAO U19 | Panathinaikos B | — |
| 2023-01-31 | Nikolaos Christogeorgos | Panathinaikos B | OFI Crete | — |
| 2023-01-26 | Konstantinos Lampsias | Terrassa FC | Panathinaikos B | Free |