Querétaro II: every transfer in and out, fees paid and earned, squad market value.
| Date | Player | From | To | Fee |
|---|---|---|---|---|
| 2022-07-01 | Rafael Fernández | Querétaro II | Querétaro FC | — |
| 2022-01-01 | Rafael Fernández | Petroleros | Querétaro II | — |
| 2018-07-01 | Luis Romo | Querétaro II | Querétaro FC | — |
| 2018-07-01 | Andrés Andrade | Querétaro II | Juniors OÖ | Free |
| 2018-01-01 | Andrés Andrade | Toluca U20 | Querétaro II | Free |
| 2017-07-01 | Luis Romo | Querétaro II | Cimarrones | Loan |
| 2017-07-01 | Jordi Cortizo | Querétaro II | Querétaro FC | — |
| 2016-07-01 | Luis Romo | Querétaro U20 | Querétaro II | — |
| 2015-07-01 | Jordi Cortizo | Querétaro II | Querétaro U20 | Loan |
| 2015-07-01 | Jaime Gómez | Querétaro II | Querétaro FC | — |
| 2015-01-01 | Jordi Cortizo | Querétaro U17 | Querétaro II | — |
| 2014-07-01 | Jaime Gómez | Querétaro U20 | Querétaro II | — |